Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kdgRTranscriptional regulator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (249 aa)    
Predicted Functional Partners:
fis
DNA-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; putative factor-for-inversion stimulation protein; Belongs to the transcriptional regulatory Fis family.
      
 0.699
XCC4073
Transcriptional regulator araC family; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.668
XCC4070
Conserved hypothetical protein; Plays a role in the catabolism of L-fucose. Involved in the anomeric conversion of L-fucose; Belongs to the RbsD / FucU family. FucU mutarotase subfamily.
 
     0.617
slyA
Transcriptional regulator for cryptic hemolysin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
  
 0.553
XCC0811
Transcriptional regulator marR family; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.538
fucP-2
Fucose permease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.519
yybA
Transcriptional regulator marR family; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.518
vanR
Transcriptional regulator gntR family; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.457
XCC0263
Transcriptional regulator marR family; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
  
 0.455
XCC0351
Transcriptional regulator marR family; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
  
 0.455
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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