STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ndvB-2NdvB protein; Catalyzes the reversible phosphorolysis of cellobionic acid (4-O-beta-D-glucopyranosyl-D-gluconate), a probable step in cellulose degradation. May be part of a metabolic pathway where cellobionic acid is converted into alpha-D-glucose 1-phosphate and D-gluconic acid to enter glycolysis and the pentose phosphate pathway, respectively. Produces 4-O-beta-D-glucopyranosyl-D-glucuronate from alpha-D-glucose 1-phosphate and D-glucuronate with low activity in the synthetic direction. (798 aa)    
Predicted Functional Partners:
ynaJ
Cation symporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.829
cgt
Cyclomaltodextrin glucanotransferase (CGTase); Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.799
Z2969
Phage-related protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.756
vipA
Polysaccharide biosynthetic protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
      
 0.697
xsa-2
Xylosidase/arabinosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 43 family.
  
   
 0.660
pelB
Pectate lyase II; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.647
XCC3379
Truncated rhamnogalacturonase B; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.617
XCC3378
Truncated rhamnogalacturonase B; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.613
xynB-4
Xylanase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.603
idnK
Gluconokinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.602
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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