Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xylPTransport protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (495 aa)    
Predicted Functional Partners:
xsa-2
Xylosidase/arabinosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 43 family.
 
    0.864
fucP-2
Fucose permease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.831
fucP
Glucose/galactose transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.827
dgoA
4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase; Catalyzes the dehydration of D-galactonate to 2-keto-3-deoxy- D-galactonate.
     
 0.758
cirA-8
TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.634
xynA
Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.581
fecA-4
TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.505
xylB-2
Xylosidase/arabinosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 43 family.
 
    0.491
XCC4103
Sialic acid-specific 9-O-acetylesterase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 2 family.
  
     0.490
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
     
 0.451
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.