Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
XCC4186Leucin rich protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (504 aa)    
Predicted Functional Partners:
pth
Peptidyl tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
      
 0.835
XCC2565
Leucin rich protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.763
plaS
Accessory protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.540
XCC2693
Cysteine protease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.525
wxcB
Kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.517
XCC1684
ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.515
XCC0507
Ice nucleation protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.457
XCC1682
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
     0.448
XCC2437
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
     0.433
XCC1625
Unknown acidic aa rich protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.425
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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