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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cIIPhage-related regulatory protein cII; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (339 aa)    
Predicted Functional Partners:
parB
Chromosome partitioning protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the ParB family.
 
 
 0.926
parA-2
Chromosome partioning protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.768
XCC1210
Tryptophan 2,3-dioxygenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the tryptophan 2,3-dioxygenase family.
      
 0.598
tpmT
Thiopurine methyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the class I-like SAM-binding methyltransferase superfamily. TPMT family.
   
  
 0.596
kynA
Tryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.
      
 0.595
XCC4190
IS1481 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.486
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
     
 0.483
XCC1068
Possible DNA methylase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.464
XCC0989
Protein phosphatase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.432
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.