STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC4205Acetyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (203 aa)    
Predicted Functional Partners:
XCC4204
Microcystin dependent protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.946
XCC4203
Microcystin dependent protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.903
XCC4202
Microcystin dependent protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.868
XCC4206
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
 
     0.732
XCC4201
Hemagglutinin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.648
entF
ATP-dependent serine activating enzyme; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.532
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.414
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.