STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BJF81_10250Alpha-galactosidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GHMP kinase family. GalK subfamily. (394 aa)    
Predicted Functional Partners:
BJF81_04600
Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.981
OLT21060.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.978
OLT23682.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.968
OLT22547.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glucose-6-phosphate 1-epimerase family.
     
 0.844
rpsL
30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
      
 0.714
OLT21755.1
UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.693
OLT20650.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.664
rrf
5S ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
   
 0.598
OLT21717.1
dTDP-glucose 4,6-dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
   
  
 0.585
OLT20542.1
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.504
Your Current Organism:
Ornithinimicrobium sp. CNJ824
NCBI taxonomy Id: 1904966
Other names: O. sp. CNJ-824, Ornithinimicrobium sp. CNJ-824
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