STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5S_3724Opacity-associated protein A. (237 aa)    
Predicted Functional Partners:
W5S_3082
Cyd operon protein YbgE.
  
     0.774
W5S_2032
Protein YecM.
  
    0.762
W5S_0080
Diguanylate cyclase/phosphodiesterase (GGDEF and EAL domain).
  
     0.761
uspB
Universal stress protein B.
  
     0.761
W5S_2777
Uncharacterized protein.
  
     0.759
W5S_3242
Biofilm formation regulator YbaJ.
  
     0.756
W5S_4727
F0F1 ATP synthase subunit I.
  
     0.756
W5S_3773
Envelope stress response protein PspG.
  
     0.752
W5S_0131
Periplasmic protein CpxP.
  
     0.750
W5S_1371
UPF0304 protein W5S_1371; Belongs to the UPF0304 family.
  
     0.750
Your Current Organism:
Pectobacterium parmentieri
NCBI taxonomy Id: 1905730
Other names: CFBP 8475, LMG 29774, LMG:29774, P. parmentieri, Pectobacterium parmentieri Khayi et al. 2016, Pectobacterium sp. SCC3193, strain RNS 08-42-1A, strain RNS 08.42.1A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.