Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CC_0025 | CC_0026 | CC_0025 | CC_0026 | Major facilitator family transporter; Identified by match to protein family HMM. | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM. | 0.615 |
| CC_0025 | CC_0027 | CC_0025 | CC_0027 | Major facilitator family transporter; Identified by match to protein family HMM. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.423 |
| CC_0025 | CC_0886 | CC_0025 | CC_0886 | Major facilitator family transporter; Identified by match to protein family HMM. | Riboflavin synthase, alpha subunit; Identified by match to TIGR protein family HMM TIGR00187. | 0.452 |
| CC_0025 | CC_2412 | CC_0025 | CC_2412 | Major facilitator family transporter; Identified by match to protein family HMM. | Major facilitator family transporter; Identified by match to protein family HMM. | 0.431 |
| CC_0025 | CC_3714 | CC_0025 | CC_3714 | Major facilitator family transporter; Identified by match to protein family HMM. | Identified by match to protein family HMM. | 0.423 |
| CC_0025 | rpmE | CC_0025 | CC_3275 | Major facilitator family transporter; Identified by match to protein family HMM. | Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. | 0.592 |
| CC_0025 | rpmJ | CC_0025 | CC_3321 | Major facilitator family transporter; Identified by match to protein family HMM. | Ribosomal protein L36; Identified by match to protein family HMM; Belongs to the bacterial ribosomal protein bL36 family. | 0.451 |
| CC_0026 | CC_0025 | CC_0026 | CC_0025 | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM. | Major facilitator family transporter; Identified by match to protein family HMM. | 0.615 |
| CC_0026 | CC_0027 | CC_0026 | CC_0027 | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.529 |
| CC_0027 | CC_0025 | CC_0027 | CC_0025 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Major facilitator family transporter; Identified by match to protein family HMM. | 0.423 |
| CC_0027 | CC_0026 | CC_0027 | CC_0026 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM. | 0.529 |
| CC_0886 | CC_0025 | CC_0886 | CC_0025 | Riboflavin synthase, alpha subunit; Identified by match to TIGR protein family HMM TIGR00187. | Major facilitator family transporter; Identified by match to protein family HMM. | 0.452 |
| CC_0886 | rpmE | CC_0886 | CC_3275 | Riboflavin synthase, alpha subunit; Identified by match to TIGR protein family HMM TIGR00187. | Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. | 0.663 |
| CC_0886 | rpmJ | CC_0886 | CC_3321 | Riboflavin synthase, alpha subunit; Identified by match to TIGR protein family HMM TIGR00187. | Ribosomal protein L36; Identified by match to protein family HMM; Belongs to the bacterial ribosomal protein bL36 family. | 0.663 |
| CC_2412 | CC_0025 | CC_2412 | CC_0025 | Major facilitator family transporter; Identified by match to protein family HMM. | Major facilitator family transporter; Identified by match to protein family HMM. | 0.431 |
| CC_3714 | CC_0025 | CC_3714 | CC_0025 | Identified by match to protein family HMM. | Major facilitator family transporter; Identified by match to protein family HMM. | 0.423 |
| rpmE | CC_0025 | CC_3275 | CC_0025 | Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. | Major facilitator family transporter; Identified by match to protein family HMM. | 0.592 |
| rpmE | CC_0886 | CC_3275 | CC_0886 | Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. | Riboflavin synthase, alpha subunit; Identified by match to TIGR protein family HMM TIGR00187. | 0.663 |
| rpmE | rpmJ | CC_3275 | CC_3321 | Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. | Ribosomal protein L36; Identified by match to protein family HMM; Belongs to the bacterial ribosomal protein bL36 family. | 0.997 |
| rpmJ | CC_0025 | CC_3321 | CC_0025 | Ribosomal protein L36; Identified by match to protein family HMM; Belongs to the bacterial ribosomal protein bL36 family. | Major facilitator family transporter; Identified by match to protein family HMM. | 0.451 |
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