STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0027Conserved hypothetical protein; Identified by Glimmer2; putative. (229 aa)    
Predicted Functional Partners:
CC_0028
TonB-dependent receptor; Identified by match to protein family HMM.
 
  
 0.952
FixK
Transcriptional regulator, Crp family; Identified by match to protein family HMM.
   
  
 0.741
ahpD
Alkyl hydroperoxide reductase D; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
      
 0.732
CC_2928
TonB-dependent receptor; Identified by match to protein family HMM.
 
  
 0.715
CC_0561
Sigma factor, putative; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.
   
  
 0.540
CC_0026
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.
       0.529
hup
DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions; Belongs to the bacterial histone-like protein family.
      
 0.517
CC_1517
TonB-dependent receptor; Identified by match to protein family HMM.
 
  
 0.496
CC_0210
TonB-dependent receptor; Identified by match to protein family HMM.
  
  
 0.488
CC_3146
TonB-dependent receptor; Identified by match to protein family HMM.
  
  
 0.488
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.