Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CC_0061 | CC_0062 | CC_0061 | CC_0062 | Identified by match to PFAM protein family HMM PF00881. | NifU-like domain protein; Identified by match to protein family HMM. | 0.623 |
| CC_0061 | CC_0063 | CC_0061 | CC_0063 | Identified by match to PFAM protein family HMM PF00881. | Identified by match to protein family HMM; Belongs to the cytochrome P450 family. | 0.439 |
| CC_0062 | CC_0061 | CC_0062 | CC_0061 | NifU-like domain protein; Identified by match to protein family HMM. | Identified by match to PFAM protein family HMM PF00881. | 0.623 |
| CC_0062 | CC_0063 | CC_0062 | CC_0063 | NifU-like domain protein; Identified by match to protein family HMM. | Identified by match to protein family HMM; Belongs to the cytochrome P450 family. | 0.572 |
| CC_0062 | CC_0462 | CC_0062 | CC_0462 | NifU-like domain protein; Identified by match to protein family HMM. | Hypothetical protein; Identified by Glimmer2; putative. | 0.686 |
| CC_0062 | CC_1858 | CC_0062 | CC_1858 | NifU-like domain protein; Identified by match to protein family HMM. | Identified by match to protein family HMM; Belongs to the HesB/IscA family. | 0.744 |
| CC_0062 | CC_1865 | CC_0062 | CC_1865 | NifU-like domain protein; Identified by match to protein family HMM. | Aminotransferase, class V; Identified by match to protein family HMM. | 0.823 |
| CC_0062 | CC_2009 | CC_0062 | CC_2009 | NifU-like domain protein; Identified by match to protein family HMM. | Identified by match to protein family HMM; Belongs to the HesB/IscA family. | 0.643 |
| CC_0062 | CC_2505 | CC_0062 | CC_2505 | NifU-like domain protein; Identified by match to protein family HMM. | Identified by match to protein family HMM; Belongs to the glutaredoxin family. Monothiol subfamily. | 0.645 |
| CC_0062 | SdhB | CC_0062 | CC_3526 | NifU-like domain protein; Identified by match to protein family HMM. | Succinate dehydrogenase, iron-sulfur protein; Identified by match to protein family HMM; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | 0.809 |
| CC_0062 | hemC | CC_0062 | CC_0072 | NifU-like domain protein; Identified by match to protein family HMM. | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.619 |
| CC_0062 | nuoI | CC_0062 | CC_1942 | NifU-like domain protein; Identified by match to protein family HMM. | NADH dehydrogenase I, I subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.776 |
| CC_0063 | CC_0061 | CC_0063 | CC_0061 | Identified by match to protein family HMM; Belongs to the cytochrome P450 family. | Identified by match to PFAM protein family HMM PF00881. | 0.439 |
| CC_0063 | CC_0062 | CC_0063 | CC_0062 | Identified by match to protein family HMM; Belongs to the cytochrome P450 family. | NifU-like domain protein; Identified by match to protein family HMM. | 0.572 |
| CC_0462 | CC_0062 | CC_0462 | CC_0062 | Hypothetical protein; Identified by Glimmer2; putative. | NifU-like domain protein; Identified by match to protein family HMM. | 0.686 |
| CC_0462 | CC_1858 | CC_0462 | CC_1858 | Hypothetical protein; Identified by Glimmer2; putative. | Identified by match to protein family HMM; Belongs to the HesB/IscA family. | 0.960 |
| CC_0462 | CC_1865 | CC_0462 | CC_1865 | Hypothetical protein; Identified by Glimmer2; putative. | Aminotransferase, class V; Identified by match to protein family HMM. | 0.999 |
| CC_0462 | CC_2009 | CC_0462 | CC_2009 | Hypothetical protein; Identified by Glimmer2; putative. | Identified by match to protein family HMM; Belongs to the HesB/IscA family. | 0.828 |
| CC_0462 | CC_2505 | CC_0462 | CC_2505 | Hypothetical protein; Identified by Glimmer2; putative. | Identified by match to protein family HMM; Belongs to the glutaredoxin family. Monothiol subfamily. | 0.409 |
| CC_1858 | CC_0062 | CC_1858 | CC_0062 | Identified by match to protein family HMM; Belongs to the HesB/IscA family. | NifU-like domain protein; Identified by match to protein family HMM. | 0.744 |
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