STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0067Conserved hypothetical protein; Identified by Glimmer2; putative. (253 aa)    
Predicted Functional Partners:
CC_1389
NADH-ubiquinone oxidoreductase-related protein; Similar to SP:Q02375 PID:226; identified by sequence similarity; putative.
  
  
 0.742
tsaD
Peptidase M22 family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
    0.595
CC_0068
Ferredoxin, Rieske 2Fe-2S family; Identified by match to protein family HMM.
       0.576
CC_0069
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.576
gpsA
Glycerol-3-phosphate dehydrogenase (NAD+); Identified by match to PFAM protein family HMM PF01210; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
       0.572
CC_0066
Methyl-accepting chemotaxis protein McpQ; Identified by match to protein family HMM.
  
    0.470
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
  
 0.429
CC_2906
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0276 family.
   
    0.424
CC_3255
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0276 family.
   
    0.424
CC_3415
Conserved hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
   
    0.402
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.