STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0081Transcriptional regulator, putative; Identified by match to protein family HMM. (159 aa)    
Predicted Functional Partners:
CC_0080
Identified by match to PFAM protein family HMM PF00441.
 
    0.649
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.644
CC_0079
acyl-CoA dehydrogenase, long-chain specific; Identified by match to PFAM protein family HMM PF00441.
  
    0.581
CC_2772
Identified by match to protein family HMM.
  
 
 0.563
CC_0078
Hypothetical protein; Identified by Glimmer2; putative.
       0.545
CC_0082
Hypothetical protein; Identified by Glimmer2; putative; Belongs to the peptidase S24 family.
  
  
 0.530
CC_3010
Identified by match to protein family HMM.
  
 
 0.527
CC_2670
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.
  
 
 0.516
dnaJ
dnaJ protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and Gr [...]
  
 
 0.509
CC_0917
Identified by match to protein family HMM.
  
 
 0.509
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.