STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0088Conserved hypothetical protein; Identified by Glimmer2; putative. (1607 aa)    
Predicted Functional Partners:
CC_0804
Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
 
 0.940
CC_3607
Glutamate synthase, large subunit; Identified by match to PFAM protein family HMM PF01645.
     
 0.936
CC_3130
Identified by match to protein family HMM; Belongs to the glutamine synthetase family.
  
 
 0.919
CC_3606
Glutamate synthase, small subunit; Identified by match to protein family HMM.
     
 0.915
CC_3138
Identified by match to protein family HMM; Belongs to the glutamine synthetase family.
   
 
 0.911
CC_1969
Glutamine synthetase, class I; Identified by match to TIGR protein family HMM TIGR00653.
     
 0.907
CC_0615
Nitrite reductase [NAD(P)H], large subunit; Identified by match to protein family HMM; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
    
  0.905
glsA
Similar to GP:3746520; identified by sequence similarity; putative; Belongs to the glutaminase family.
   
 
 0.904
CC_0616
Nitrite reductase [NAD(P)H], small subunit; Identified by match to protein family HMM.
   
 
  0.901
CC_1534
Aspartate aminotransferase; Identified by match to protein family HMM.
     
  0.900
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.