Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CC_0091 | CC_0710 | CC_0091 | CC_0710 | Identified by match to protein family HMM. | Hypothetical protein; Identified by Glimmer2; putative. | 0.885 |
CC_0091 | CC_1086 | CC_0091 | CC_1086 | Identified by match to protein family HMM. | Sensory box protein; Identified by match to protein family HMM. | 0.663 |
CC_0091 | CC_2670 | CC_0091 | CC_2670 | Identified by match to protein family HMM. | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM. | 0.748 |
CC_0091 | CC_2941 | CC_0091 | CC_2941 | Identified by match to protein family HMM. | Hypothetical protein; Identified by Glimmer2; putative. | 0.628 |
CC_0091 | CC_2943 | CC_0091 | CC_2943 | Identified by match to protein family HMM. | Pilus assembly protein CpaE; Identified by match to protein family HMM. | 0.741 |
CC_0091 | CC_2946 | CC_0091 | CC_2946 | Identified by match to protein family HMM. | Pilus assembly protein CpaB; Similar to GP:7208424; identified by sequence similarity; putative. | 0.626 |
CC_0091 | CC_2971 | CC_0091 | CC_2971 | Identified by match to protein family HMM. | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM. | 0.698 |
CC_0091 | CC_3148 | CC_0091 | CC_3148 | Identified by match to protein family HMM. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.655 |
CC_0091 | CC_3396 | CC_0091 | CC_3396 | Identified by match to protein family HMM. | Identified by match to protein family HMM. | 0.752 |
CC_0091 | lovK | CC_0091 | CC_0285 | Identified by match to protein family HMM. | LOV histidine kinase LovK; Identified by match to protein family HMM. | 0.773 |
CC_0710 | CC_0091 | CC_0710 | CC_0091 | Hypothetical protein; Identified by Glimmer2; putative. | Identified by match to protein family HMM. | 0.885 |
CC_0710 | CC_1086 | CC_0710 | CC_1086 | Hypothetical protein; Identified by Glimmer2; putative. | Sensory box protein; Identified by match to protein family HMM. | 0.412 |
CC_0710 | CC_2670 | CC_0710 | CC_2670 | Hypothetical protein; Identified by Glimmer2; putative. | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM. | 0.614 |
CC_0710 | CC_2943 | CC_0710 | CC_2943 | Hypothetical protein; Identified by Glimmer2; putative. | Pilus assembly protein CpaE; Identified by match to protein family HMM. | 0.401 |
CC_0710 | CC_2971 | CC_0710 | CC_2971 | Hypothetical protein; Identified by Glimmer2; putative. | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM. | 0.607 |
CC_0710 | CC_3148 | CC_0710 | CC_3148 | Hypothetical protein; Identified by Glimmer2; putative. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.803 |
CC_0710 | CC_3396 | CC_0710 | CC_3396 | Hypothetical protein; Identified by Glimmer2; putative. | Identified by match to protein family HMM. | 0.926 |
CC_1086 | CC_0091 | CC_1086 | CC_0091 | Sensory box protein; Identified by match to protein family HMM. | Identified by match to protein family HMM. | 0.663 |
CC_1086 | CC_0710 | CC_1086 | CC_0710 | Sensory box protein; Identified by match to protein family HMM. | Hypothetical protein; Identified by Glimmer2; putative. | 0.412 |
CC_1086 | CC_2670 | CC_1086 | CC_2670 | Sensory box protein; Identified by match to protein family HMM. | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM. | 0.652 |
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