STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0093Integral membrane protein; Identified by match to protein family HMM. (297 aa)    
Predicted Functional Partners:
CC_0094
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase; Identified by match to protein family HMM.
  
    0.775
CC_0092
UDP-glucose 4-epimerase; Identified by match to protein family HMM; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
  
 0.464
CC_1876
N-acetylmuramoyl-L-alanine amidase; Identified by match to PFAM protein family HMM PF01520.
   
  
 0.447
CC_1509
2-keto-4-pentenoate hydratase, putative; Identified by match to protein family HMM.
  
    0.435
CC_0095
Identified by match to protein family HMM; Belongs to the glycosyltransferase 26 family.
  
    0.411
CC_0649
Hypothetical protein; Identified by Glimmer2; putative.
  
   0.401
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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