STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0101Ribulose-phosphate 3-epimerase; Identified by match to PFAM protein family HMM PF00834; Belongs to the ribulose-phosphate 3-epimerase family. (226 aa)    
Predicted Functional Partners:
CC_3620
Identified by match to TIGR protein family HMM TIGR00232; Belongs to the transketolase family.
 0.993
rpiA
Ribose-5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
  
 0.954
CC_1496
Carbohydrate kinase, pfkB family; Identified by match to protein family HMM.
  
 0.858
CC_1057
2-dehydro-3-deoxygluconokinase; Identified by match to protein family HMM.
  
 0.857
CC_0100
Hypothetical protein; Identified by Glimmer2; putative.
       0.810
FabG
2-deoxy-D-gluconate 3-dehydrogenase; Identified by match to protein family HMM.
   
 
 0.806
CC_1488
Conserved hypothetical protein; Identified by Glimmer2; putative.
     
 0.804
CC_0532
Mandelate racemase/muconate lactonizing enzyme family; Catalyzes the dehydration of D-mannonate. Has no detectable activity with a panel of 70 other acid sugars (in vitro).
     
  0.800
CC_2812
Mandelate racemase / muconate lactonizing enzyme family; Catalyzes the dehydration of D-mannonate. Has no detectable activity with a panel of 70 other acid sugars (in vitro).
     
  0.800
CC_0102
rRNA methyltransferase RsmB; Identified by match to TIGR protein family HMM TIGR00563; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
   0.755
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.