STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0133Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (266 aa)    
Predicted Functional Partners:
CC_2655
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM.
 
 
 0.760
CC_1656
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM.
 
 
 0.658
CC_2836
3-oxoacyl-(acyl-carrier protein) reductase; Identified by match to protein family HMM.
 
 
 0.650
CC_0417
3-ketoacyl-acyl carrier protein reductase, putative; Identified by match to protein family HMM.
 
 
 0.614
CC_0821
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM.
 
 
 0.612
CC_0132
Conserved hypothetical protein; Identified by Glimmer2; putative.
     
 0.553
CC_2306
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.551
CC_2093
3-oxoacyl-(acyl-carrier-protein) reductase, putative; Identified by match to protein family HMM; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.496
rlmN
Conserved hypothetical protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.
  
    0.452
CC_0124
3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.449
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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