Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC_0139TonB-dependent receptor; Identified by match to protein family HMM. (730 aa)    
Predicted Functional Partners:
CC_2565
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.695
CC_2572
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.595
CC_1623
TonB-dependent receptor; Identified by match to protein family HMM.
  
   
 0.588
CC_2785
Bleomycin resistance protein; Identified by match to PFAM protein family HMM PF02105.
  
     0.581
CC_3194
TonB-dependent receptor; Similar to GP:9105165; identified by sequence similarity; putative.
  
   
 0.564
CC_0137
ampG protein, putative; Identified by match to protein family HMM.
 
     0.516
CC_1758
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.485
shkA
Sensor histidine kinase/response regulator; Identified by match to protein family HMM.
       0.478
CC_0498
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.476
CC_0560
Transcriptional regulator, putative; Similar to GP:3091150; identified by sequence similarity; putative.
  
 
 0.475
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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