| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CC_0155 | CC_0157 | CC_0155 | CC_0157 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Transcriptional regulator, ArsR family; Identified by match to protein family HMM. | 0.409 |
| CC_0155 | CC_0158 | CC_0155 | CC_0158 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.409 |
| CC_0155 | dnaN | CC_0155 | CC_0156 | Conserved hypothetical protein; Identified by Glimmer2; putative. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.511 |
| CC_0157 | CC_0155 | CC_0157 | CC_0155 | Transcriptional regulator, ArsR family; Identified by match to protein family HMM. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.409 |
| CC_0157 | CC_0158 | CC_0157 | CC_0158 | Transcriptional regulator, ArsR family; Identified by match to protein family HMM. | Hypothetical protein; Identified by Glimmer2; putative. | 0.778 |
| CC_0157 | dnaN | CC_0157 | CC_0156 | Transcriptional regulator, ArsR family; Identified by match to protein family HMM. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.604 |
| CC_0157 | recF | CC_0157 | CC_0159 | Transcriptional regulator, ArsR family; Identified by match to protein family HMM. | recF protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP (By similarity). | 0.443 |
| CC_0158 | CC_0155 | CC_0158 | CC_0155 | Hypothetical protein; Identified by Glimmer2; putative. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.409 |
| CC_0158 | CC_0157 | CC_0158 | CC_0157 | Hypothetical protein; Identified by Glimmer2; putative. | Transcriptional regulator, ArsR family; Identified by match to protein family HMM. | 0.778 |
| CC_0158 | CC_3529 | CC_0158 | CC_3529 | Hypothetical protein; Identified by Glimmer2; putative. | Succinate dehydrogenase, cytochrome b556 subunit; Identified by match to PFAM protein family HMM PF01127. | 0.440 |
| CC_0158 | dnaN | CC_0158 | CC_0156 | Hypothetical protein; Identified by Glimmer2; putative. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.603 |
| CC_0158 | nuoD | CC_0158 | CC_1952 | Hypothetical protein; Identified by Glimmer2; putative. | NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. | 0.426 |
| CC_0158 | nuoI | CC_0158 | CC_1942 | Hypothetical protein; Identified by Glimmer2; putative. | NADH dehydrogenase I, I subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.476 |
| CC_0158 | recF | CC_0158 | CC_0159 | Hypothetical protein; Identified by Glimmer2; putative. | recF protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP (By similarity). | 0.431 |
| CC_3529 | CC_0158 | CC_3529 | CC_0158 | Succinate dehydrogenase, cytochrome b556 subunit; Identified by match to PFAM protein family HMM PF01127. | Hypothetical protein; Identified by Glimmer2; putative. | 0.440 |
| CC_3529 | nuoD | CC_3529 | CC_1952 | Succinate dehydrogenase, cytochrome b556 subunit; Identified by match to PFAM protein family HMM PF01127. | NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. | 0.925 |
| CC_3529 | nuoI | CC_3529 | CC_1942 | Succinate dehydrogenase, cytochrome b556 subunit; Identified by match to PFAM protein family HMM PF01127. | NADH dehydrogenase I, I subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.977 |
| dnaN | CC_0155 | CC_0156 | CC_0155 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.511 |
| dnaN | CC_0157 | CC_0156 | CC_0157 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Transcriptional regulator, ArsR family; Identified by match to protein family HMM. | 0.604 |
| dnaN | CC_0158 | CC_0156 | CC_0158 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Hypothetical protein; Identified by Glimmer2; putative. | 0.603 |