STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0205NADP(H) oxidoreductase; Similar to GP:5019382; identified by sequence similarity; putative. (185 aa)    
Predicted Functional Partners:
CC_0204
TrkA family protein; Identified by match to PFAM protein family HMM PF02080; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
 0.990
CC_3496
TrkA family protein; Identified by match to PFAM protein family HMM PF02080; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
 
 0.935
CC_0206
3-oxoadipate CoA-transferase, alpha subunit; Identified by match to PFAM protein family HMM PF01144.
       0.532
CC_0207
3-oxoadipate CoA-transferase, beta subunit; Identified by match to PFAM protein family HMM PF01144.
       0.532
CC_0360
Ornithine decarboxylase, putative; Identified by match to protein family HMM; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
  0.470
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
  0.467
CC_1534
Aspartate aminotransferase; Identified by match to protein family HMM.
   
    0.436
CC_0738
Aminotransferase, class I; Identified by match to protein family HMM.
   
    0.435
CC_1382
Aminotransferase, class I; Identified by match to protein family HMM.
   
    0.435
CC_2455
Aminotransferase, class I; Identified by match to protein family HMM.
   
    0.435
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.