Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC_0209Conserved hypothetical protein; Identified by Glimmer2; putative. (524 aa)    
Predicted Functional Partners:
CC_0469
Identified by match to protein family HMM.
 
  
 0.754
CC_0468
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.693
CC_0075
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.600
CC_2301
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.577
CC_0208
Identified by match to protein family HMM.
  
    0.567
CC_0210
TonB-dependent receptor; Identified by match to protein family HMM.
       0.555
hfsH
HfsH; Identified by match to PFAM protein family HMM PF01522.
 
  
 0.554
CC_1691
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.519
spmX
Identified by match to protein family HMM.
  
     0.501
CC_2153
Polysaccharide deacetylase; Identified by match to PFAM protein family HMM PF01522.
 
  
 0.480
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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