Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CC_0075 | CC_0209 | CC_0075 | CC_0209 | Hypothetical protein; Identified by Glimmer2; putative. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.600 |
CC_0075 | CC_1691 | CC_0075 | CC_1691 | Hypothetical protein; Identified by Glimmer2; putative. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.535 |
CC_0075 | CC_2301 | CC_0075 | CC_2301 | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.689 |
CC_0075 | spmX | CC_0075 | CC_2173 | Hypothetical protein; Identified by Glimmer2; putative. | Identified by match to protein family HMM. | 0.501 |
CC_0075 | staR | CC_0075 | CC_2251 | Hypothetical protein; Identified by Glimmer2; putative. | Transcriptional regulator, Cro/CI family; Identified by match to protein family HMM. | 0.593 |
CC_0208 | CC_0209 | CC_0208 | CC_0209 | Identified by match to protein family HMM. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.566 |
CC_0208 | CC_0210 | CC_0208 | CC_0210 | Identified by match to protein family HMM. | TonB-dependent receptor; Identified by match to protein family HMM. | 0.412 |
CC_0209 | CC_0075 | CC_0209 | CC_0075 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.600 |
CC_0209 | CC_0208 | CC_0209 | CC_0208 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Identified by match to protein family HMM. | 0.566 |
CC_0209 | CC_0210 | CC_0209 | CC_0210 | Conserved hypothetical protein; Identified by Glimmer2; putative. | TonB-dependent receptor; Identified by match to protein family HMM. | 0.555 |
CC_0209 | CC_0468 | CC_0209 | CC_0468 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.697 |
CC_0209 | CC_0469 | CC_0209 | CC_0469 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Identified by match to protein family HMM. | 0.755 |
CC_0209 | CC_1691 | CC_0209 | CC_1691 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.509 |
CC_0209 | CC_2301 | CC_0209 | CC_2301 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.581 |
CC_0209 | hfsH | CC_0209 | CC_2428 | Conserved hypothetical protein; Identified by Glimmer2; putative. | HfsH; Identified by match to PFAM protein family HMM PF01522. | 0.543 |
CC_0209 | spmX | CC_0209 | CC_2173 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Identified by match to protein family HMM. | 0.501 |
CC_0209 | staR | CC_0209 | CC_2251 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Transcriptional regulator, Cro/CI family; Identified by match to protein family HMM. | 0.475 |
CC_0210 | CC_0208 | CC_0210 | CC_0208 | TonB-dependent receptor; Identified by match to protein family HMM. | Identified by match to protein family HMM. | 0.412 |
CC_0210 | CC_0209 | CC_0210 | CC_0209 | TonB-dependent receptor; Identified by match to protein family HMM. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.555 |
CC_0468 | CC_0209 | CC_0468 | CC_0209 | Hypothetical protein; Identified by Glimmer2; putative. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.697 |
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