STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0211Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the agmatine deiminase family. (370 aa)    
Predicted Functional Partners:
CC_0212
Hydrolase, carbon-nitrogen family; Identified by match to PFAM protein family HMM PF00795.
 
 0.999
CC_0213
Acetyltransferase, GNAT family; Identified by match to protein family HMM.
       0.773
CC_2963
Hydrolase, carbon-nitrogen family; Identified by match to PFAM protein family HMM PF00795.
 
  
 0.646
CC_0828
Identified by match to PFAM protein family HMM PF00795.
  
 0.643
CC_0210
TonB-dependent receptor; Identified by match to protein family HMM.
       0.603
CC_0214
TonB-dependent receptor; Identified by match to protein family HMM.
  
    0.497
CC_0209
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.462
CC_0360
Ornithine decarboxylase, putative; Identified by match to protein family HMM; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
  
 0.436
CC_0215
SapC-related protein; Similar to GP:4009446; identified by sequence similarity; putative.
 
    0.405
argF
Ornithine carbamoyltransferase, anabolic; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
  
  
 0.401
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.