STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0213Acetyltransferase, GNAT family; Identified by match to protein family HMM. (182 aa)    
Predicted Functional Partners:
CC_0212
Hydrolase, carbon-nitrogen family; Identified by match to PFAM protein family HMM PF00795.
  
    0.784
CC_0211
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the agmatine deiminase family.
       0.773
CC_0317
Acetyltransferase, GNAT family; Identified by match to protein family HMM.
  
     0.707
CC_1548
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.680
CC_1083
Acetyltransferase, GNAT family; Identified by match to protein family HMM.
  
     0.654
CC_0210
TonB-dependent receptor; Identified by match to protein family HMM.
       0.603
CC_0214
TonB-dependent receptor; Identified by match to protein family HMM.
       0.495
CC_0209
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.446
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.441
suhB
Extragenic suppressor protein SuhB; Identified by match to PFAM protein family HMM PF00459; Belongs to the inositol monophosphatase superfamily.
 
 
    0.432
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.