CC_0214 protein (Caulobacter vibrioides CB15)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

CC_0214

TonB-dependent receptor; Identified by match to protein family HMM. (687 aa)

Predicted Functional Partners:

CC_1517

0.902

CC_2722

0.783

CC_1519

0.777

CC_1520

0.777

CC_1518

0.740

CC_0663

0.736

CC_0320

0.732

CC_2720

0.731

CC_2820

0.716

CC_0335

0.709

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CC_0214	CC_0320	TonB-dependent receptor; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.732
CC_0214	CC_0335	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.709
CC_0214	CC_0663	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor, putative; Identified by match to protein family HMM.	0.736
CC_0214	CC_1517	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.902
CC_0214	CC_1518	TonB-dependent receptor; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.740
CC_0214	CC_1519	TonB-dependent receptor; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.777
CC_0214	CC_1520	TonB-dependent receptor; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.777
CC_0214	CC_2720	TonB-dependent receptor; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.731
CC_0214	CC_2722	TonB-dependent receptor; Identified by match to protein family HMM.	Metal ion efflux membrane fusion protein family; Identified by match to protein family HMM; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.783
CC_0214	CC_2820	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor, putative; Similar to GP:9107389; identified by sequence similarity; putative.	0.716
CC_0320	CC_0214	Hypothetical protein; Identified by Glimmer2; putative.	TonB-dependent receptor; Identified by match to protein family HMM.	0.732
CC_0320	CC_0663	Hypothetical protein; Identified by Glimmer2; putative.	TonB-dependent receptor, putative; Identified by match to protein family HMM.	0.732
CC_0320	CC_1517	Hypothetical protein; Identified by Glimmer2; putative.	TonB-dependent receptor; Identified by match to protein family HMM.	0.732
CC_0320	CC_1518	Hypothetical protein; Identified by Glimmer2; putative.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.732
CC_0320	CC_1519	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.732
CC_0320	CC_1520	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.736
CC_0320	CC_2720	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.731
CC_0320	CC_2722	Hypothetical protein; Identified by Glimmer2; putative.	Metal ion efflux membrane fusion protein family; Identified by match to protein family HMM; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.731
CC_0335	CC_0214	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.709
CC_0335	CC_2820	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor, putative; Similar to GP:9107389; identified by sequence similarity; putative.	0.741