STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PhhBPterin-4-alpha-carbinolamine dehydratase; Identified by match to PFAM protein family HMM PF01329. (94 aa)    
Predicted Functional Partners:
phhA
Phenylalanine-4-hydroxylase; Identified by match to protein family HMM.
 
 0.990
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
  
  
 0.902
CC_2533
4-hydroxyphenylpyruvate dioxygenase; Identified by match to protein family HMM.
  
  
 0.717
CC_0244
Hydrolase, haloacid dehalogenase-like family; Identified by match to PFAM protein family HMM PF00702.
  
    0.694
CC_0246
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase; Identified by match to protein family HMM.
  
  
 0.655
CC_0243
Hypothetical protein; Identified by Glimmer2; putative.
       0.493
CC_0408
Identified by match to protein family HMM; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
      0.493
CC_2127
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.422
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.