Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC_0263Identified by match to PFAM protein family HMM PF00375; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (417 aa)    
Predicted Functional Partners:
CC_3528
Succinate dehydrogenase, hydrophobic membrane anchor protein, putative; Similar to GP:3273340; identified by sequence similarity; putative.
   
  
 0.503
CC_2622
NADP-dependent malic enzyme; Identified by match to PFAM protein family HMM PF01515.
  
  
 0.469
CC_3549
NADP-dependent malic enzyme; Identified by match to PFAM protein family HMM PF01515.
  
  
 0.469
CC_0426
Amino acid permease family protein; Identified by match to PFAM protein family HMM PF00324.
 
 
 0.440
CC_1184
Amino acid permease family protein; Identified by match to PFAM protein family HMM PF00324.
 
 
 0.440
CC_0262
Hypothetical protein; Identified by Glimmer2; putative.
       0.434
CC_0448
PTS system, fructose-specific EIIA/HPr/EI components; Identified by match to protein family HMM.
     
 0.407
CC_0537
PTS system, fructose-specific EIIA/HPr/EI components; Identified by match to protein family HMM.
     
 0.407
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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