STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0277Hypothetical protein; Identified by Glimmer2; putative. (196 aa)    
Predicted Functional Partners:
CC_0204
TrkA family protein; Identified by match to PFAM protein family HMM PF02080; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
 
 0.844
CC_3496
TrkA family protein; Identified by match to PFAM protein family HMM PF02080; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
 
 0.844
CC_1409
Outer membrane protein OmpW; Similar to SP:P21364 GB:X13583 PID:43211 PID:902379 PID:902388; identified by sequence similarity; putative.
  
  
 0.613
glsA
Similar to GP:3746520; identified by sequence similarity; putative; Belongs to the glutaminase family.
       0.610
dapE
Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
       0.572
CC_0274
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.534
CC_0762
Cytochrome d ubiquinol oxidase subunit I; Identified by match to PFAM protein family HMM PF01654.
   
  
 0.504
CC_2115
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.479
FtrA
Transcriptional regulator, AraC family; Identified by match to protein family HMM.
     
 0.479
CC_0360
Ornithine decarboxylase, putative; Identified by match to protein family HMM; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
  0.467
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.