STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0299Conserved hypothetical protein; Identified by Glimmer2; putative. (360 aa)    
Predicted Functional Partners:
CC_0690
Identified by match to PFAM protein family HMM PF00441.
 
 0.980
CC_0244
Hydrolase, haloacid dehalogenase-like family; Identified by match to PFAM protein family HMM PF00702.
    0.916
CC_3454
Identified by match to PFAM protein family HMM PF00441.
 
 
 0.916
CC_0427
acyl-CoA dehydrogenase, putative; Identified by match to PFAM protein family HMM PF00441.
 
 
 0.904
CC_1350
acyl-CoA dehydrogenase; Identified by match to PFAM protein family HMM PF00441.
 
 
 0.904
CC_0079
acyl-CoA dehydrogenase, long-chain specific; Identified by match to PFAM protein family HMM PF00441.
 
 0.876
CC_0300
Xaa-Pro dipeptidase, putative; Identified by match to protein family HMM.
  
    0.776
CC_0096
Alcohol dehydrogenase, zinc-containing; Identified by match to protein family HMM.
 
   0.698
CC_1798
acyl-CoA dehydrogenase; Identified by match to PFAM protein family HMM PF00441.
 
 
 0.686
CC_1813
Identified by match to PFAM protein family HMM PF00378.
 
 
 0.595
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.