STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0300Xaa-Pro dipeptidase, putative; Identified by match to protein family HMM. (428 aa)    
Predicted Functional Partners:
CC_0299
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.776
CC_3180
Adenosine deaminase; Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism.
   
  
 0.736
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
  
 0.632
hutH
Histidine ammonia-lyase; Identified by match to protein family HMM; Belongs to the PAL/histidase family.
  
  
 0.630
CC_0298
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.562
CC_0388
Dihydroorotase; Identified by match to PFAM protein family HMM PF00744.
      
 0.520
CC_2444
Aspartate transcarbamoylase, pyrC' subunit; Identified by match to PFAM protein family HMM PF00744.
      
 0.520
CC_3357
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.516
CC_0889
Leucine aminopeptidase-related protein; Identified by match to protein family HMM.
  
     0.430
CC_0958
Formiminoglutamase; Similar to GP:2642341; identified by sequence similarity; putative.
  
  
 0.426
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.