STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0307Hypothetical protein; Identified by Glimmer2; putative. (74 aa)    
Predicted Functional Partners:
CC_0308
Identified by match to PFAM protein family HMM PF00459.
      0.972
CC_0309
pmbA protein; Identified by match to PFAM protein family HMM PF01523.
  
    0.737
CC_0903
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.704
CC_0462
Hypothetical protein; Identified by Glimmer2; putative.
 
   0.623
CC_2245
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.586
CC_2522
Isocitrate dehydrogenase, NADP-dependent; Identified by match to TIGR protein family HMM TIGR00127; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
 
   
 0.581
CC_0310
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.575
nusB
N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
  
 
 0.519
CC_2872
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.497
CC_0103
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.492
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.