CC_0309 protein (Caulobacter vibrioides CB15)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_0309

pmbA protein; Identified by match to PFAM protein family HMM PF01523. (443 aa)

Predicted Functional Partners:

CC_2823

0.850

CC_3411

0.839

CC_0308

0.814

CC_0307

0.737

CC_0310

0.643

CC_0313

0.525

CC_0311

0.441

CC_0312

0.440

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CC_0307	CC_0308	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to PFAM protein family HMM PF00459.	0.972
CC_0307	CC_0309	Hypothetical protein; Identified by Glimmer2; putative.	pmbA protein; Identified by match to PFAM protein family HMM PF01523.	0.737
CC_0307	CC_0310	Hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.575
CC_0308	CC_0307	Identified by match to PFAM protein family HMM PF00459.	Hypothetical protein; Identified by Glimmer2; putative.	0.972
CC_0308	CC_0309	Identified by match to PFAM protein family HMM PF00459.	pmbA protein; Identified by match to PFAM protein family HMM PF01523.	0.814
CC_0308	CC_0310	Identified by match to PFAM protein family HMM PF00459.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.616
CC_0308	CC_0311	Identified by match to PFAM protein family HMM PF00459.	Hypothetical protein; Identified by Glimmer2; putative.	0.441
CC_0308	CC_0312	Identified by match to PFAM protein family HMM PF00459.	Hypothetical protein; Identified by Glimmer2; putative.	0.440
CC_0308	CC_0313	Identified by match to PFAM protein family HMM PF00459.	Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UbiD family.	0.415
CC_0309	CC_0307	pmbA protein; Identified by match to PFAM protein family HMM PF01523.	Hypothetical protein; Identified by Glimmer2; putative.	0.737
CC_0309	CC_0308	pmbA protein; Identified by match to PFAM protein family HMM PF01523.	Identified by match to PFAM protein family HMM PF00459.	0.814
CC_0309	CC_0310	pmbA protein; Identified by match to PFAM protein family HMM PF01523.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.643
CC_0309	CC_0311	pmbA protein; Identified by match to PFAM protein family HMM PF01523.	Hypothetical protein; Identified by Glimmer2; putative.	0.441
CC_0309	CC_0312	pmbA protein; Identified by match to PFAM protein family HMM PF01523.	Hypothetical protein; Identified by Glimmer2; putative.	0.440
CC_0309	CC_0313	pmbA protein; Identified by match to PFAM protein family HMM PF01523.	Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UbiD family.	0.525
CC_0309	CC_2823	pmbA protein; Identified by match to PFAM protein family HMM PF01523.	Identified by match to PFAM protein family HMM PF01523.	0.850
CC_0309	CC_3411	pmbA protein; Identified by match to PFAM protein family HMM PF01523.	tldD protein; Identified by match to PFAM protein family HMM PF01523.	0.839
CC_0310	CC_0307	Conserved hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.575
CC_0310	CC_0308	Conserved hypothetical protein; Identified by Glimmer2; putative.	Identified by match to PFAM protein family HMM PF00459.	0.616
CC_0310	CC_0309	Conserved hypothetical protein; Identified by Glimmer2; putative.	pmbA protein; Identified by match to PFAM protein family HMM PF01523.	0.643