STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0333Conserved hypothetical protein; Identified by Glimmer2; putative. (483 aa)    
Predicted Functional Partners:
CC_0332
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.886
CC_0335
TonB-dependent receptor; Identified by match to protein family HMM.
  
    0.739
CC_0334
Transcriptional regulator, TetR family; Identified by match to protein family HMM.
       0.737
CC_2531
Identified by match to protein family HMM.
   
  
 0.733
CC_3567
Identified by match to PFAM protein family HMM PF01557.
      
 0.731
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
   
  
 0.714
CC_0331
Hypothetical protein; Identified by Glimmer2; putative.
       0.635
alkB
DNA alkylation damage repair protein AlkB; Dioxygenase that repairs alkylated DNA and RNA containing 3- methylcytosine or 1-methyladenine by oxidative demethylation. Has highest activity towards 3-methylcytosine. Has lower activity towards alkylated DNA containing ethenoadenine, and no detectable activity towards 1-methylguanine or 3-methylthymine. Accepts double-stranded and single-stranded substrates. Requires molecular oxygen, alpha- ketoglutarate and iron. Provides extensive resistance to alkylating agents such as MMS and DMS (SN2 agents), but not to MMNG and MNU (SN1 agents) (By s [...]
      
 0.559
CC_0336
Major facilitator family transporter; Identified by match to protein family HMM.
  
    0.551
argH
Argininosuccinate lyase; Identified by match to TIGR protein family HMM TIGR00838.
 
      0.507
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.