STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0341Hypothetical protein; Identified by Glimmer2; putative. (329 aa)    
Predicted Functional Partners:
CC_0342
2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase; Identified by match to protein family HMM.
       0.558
CC_2230
Hydrolase, alpha/beta hydrolase fold family; Identified by match to protein family HMM.
  
     0.472
CC_0384
Hydrolase, alpha/beta hydrolase fold family; Identified by match to protein family HMM.
  
    0.455
CC_0815
TonB-dependent receptor, putative; Similar to GP:2281664; identified by sequence similarity; putative.
 
  
 0.437
CC_0649
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.428
CC_3146
TonB-dependent receptor; Identified by match to protein family HMM.
 
  
 0.427
CC_0925
OmpA-related protein; Similar to SP:P38370 GB:S64103 PID:402804; identified by sequence similarity; putative.
 
   
 0.424
CC_3001
TonB-dependent receptor; Identified by match to protein family HMM.
  
    0.416
CC_0891
Transcriptional regulator, AraC family; Identified by match to protein family HMM.
 
  
 0.413
CC_0869
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.406
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.