STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0357Fur family protein; Identified by match to protein family HMM; Belongs to the Fur family. (163 aa)    
Predicted Functional Partners:
CC_0356
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.685
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.685
CC_0358
Acid phosphatase; Identified by match to PFAM protein family HMM PF01178.
       0.680
CC_1792
ROK family protein; Identified by match to protein family HMM.
  
  
 0.675
CC_0214
TonB-dependent receptor; Identified by match to protein family HMM.
 
   
 0.601
CC_0815
TonB-dependent receptor, putative; Similar to GP:2281664; identified by sequence similarity; putative.
      
 0.573
CC_2918
Alkyl hydroperoxide reductase, subunit c; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
  
 0.564
CC_0321
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.525
CC_2927
Hypothetical protein; Identified by Glimmer2; putative.
   
  
 0.513
CC_1775
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.512
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.