CC_0364 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_0364

CBS domain protein; Identified by match to protein family HMM. (437 aa)

Predicted Functional Partners:

CC_0347

0.902

guaA

0.490

CC_0362

0.480

phnC

0.476

CC_0363

0.476

ybeY

0.456

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC_0347	CC_0364	CC_0347	CC_0364	Conserved hypothetical protein; Identified by Glimmer2; putative.	CBS domain protein; Identified by match to protein family HMM.	0.902
CC_0362	CC_0363	CC_0362	CC_0363	Phosphonates ABC transporter, periplasmic phosphonates-binding protein; Similar to SP:P16682 GB:U14003 PID:147197 PID:216592 PID:536949; identified by sequence similarity; putative.	Phosphonates ABC transporter, permease protein; Identified by match to protein family HMM.	0.998
CC_0362	CC_0364	CC_0362	CC_0364	Phosphonates ABC transporter, periplasmic phosphonates-binding protein; Similar to SP:P16682 GB:U14003 PID:147197 PID:216592 PID:536949; identified by sequence similarity; putative.	CBS domain protein; Identified by match to protein family HMM.	0.480
CC_0362	phnC	CC_0362	CC_0361	Phosphonates ABC transporter, periplasmic phosphonates-binding protein; Similar to SP:P16682 GB:U14003 PID:147197 PID:216592 PID:536949; identified by sequence similarity; putative.	Phosphonates ABC transporter, ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	0.999
CC_0363	CC_0362	CC_0363	CC_0362	Phosphonates ABC transporter, permease protein; Identified by match to protein family HMM.	Phosphonates ABC transporter, periplasmic phosphonates-binding protein; Similar to SP:P16682 GB:U14003 PID:147197 PID:216592 PID:536949; identified by sequence similarity; putative.	0.998
CC_0363	CC_0364	CC_0363	CC_0364	Phosphonates ABC transporter, permease protein; Identified by match to protein family HMM.	CBS domain protein; Identified by match to protein family HMM.	0.476
CC_0363	phnC	CC_0363	CC_0361	Phosphonates ABC transporter, permease protein; Identified by match to protein family HMM.	Phosphonates ABC transporter, ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	0.997
CC_0364	CC_0347	CC_0364	CC_0347	CBS domain protein; Identified by match to protein family HMM.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.902
CC_0364	CC_0362	CC_0364	CC_0362	CBS domain protein; Identified by match to protein family HMM.	Phosphonates ABC transporter, periplasmic phosphonates-binding protein; Similar to SP:P16682 GB:U14003 PID:147197 PID:216592 PID:536949; identified by sequence similarity; putative.	0.480
CC_0364	CC_0363	CC_0364	CC_0363	CBS domain protein; Identified by match to protein family HMM.	Phosphonates ABC transporter, permease protein; Identified by match to protein family HMM.	0.476
CC_0364	guaA	CC_0364	CC_1620	CBS domain protein; Identified by match to protein family HMM.	GMP synthase; Catalyzes the synthesis of GMP from XMP.	0.490
CC_0364	phnC	CC_0364	CC_0361	CBS domain protein; Identified by match to protein family HMM.	Phosphonates ABC transporter, ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	0.476
CC_0364	ybeY	CC_0364	CC_0054	CBS domain protein; Identified by match to protein family HMM.	Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.456
guaA	CC_0364	CC_1620	CC_0364	GMP synthase; Catalyzes the synthesis of GMP from XMP.	CBS domain protein; Identified by match to protein family HMM.	0.490
phnC	CC_0362	CC_0361	CC_0362	Phosphonates ABC transporter, ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	Phosphonates ABC transporter, periplasmic phosphonates-binding protein; Similar to SP:P16682 GB:U14003 PID:147197 PID:216592 PID:536949; identified by sequence similarity; putative.	0.999
phnC	CC_0363	CC_0361	CC_0363	Phosphonates ABC transporter, ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	Phosphonates ABC transporter, permease protein; Identified by match to protein family HMM.	0.997
phnC	CC_0364	CC_0361	CC_0364	Phosphonates ABC transporter, ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	CBS domain protein; Identified by match to protein family HMM.	0.476
ybeY	CC_0364	CC_0054	CC_0364	Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	CBS domain protein; Identified by match to protein family HMM.	0.456