Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CC_0145 | CC_0377 | CC_0145 | CC_0377 | Oxygen-independent coproporphyrinogen III oxidase, putative; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.552 |
| CC_0376 | CC_0377 | CC_0376 | CC_0377 | Hypothetical protein; Identified by Glimmer2; putative. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.633 |
| CC_0377 | CC_0145 | CC_0377 | CC_0145 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Oxygen-independent coproporphyrinogen III oxidase, putative; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.552 |
| CC_0377 | CC_0376 | CC_0377 | CC_0376 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Hypothetical protein; Identified by Glimmer2; putative. | 0.633 |
| CC_0377 | CC_0382 | CC_0377 | CC_0382 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | DNA-3-methyladenine glycosylase I; Identified by match to protein family HMM. | 0.427 |
| CC_0377 | CC_2011 | CC_0377 | CC_2011 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Exodeoxyribonuclease III; Identified by match to TIGR protein family HMM TIGR00195. | 0.692 |
| CC_0377 | CC_3538 | CC_0377 | CC_3538 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Helicase, UvrD/Rep family; Identified by match to protein family HMM; Belongs to the helicase family. UvrD subfamily. | 0.434 |
| CC_0377 | CC_3706 | CC_0377 | CC_3706 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Exodeoxyribonuclease III; Identified by match to TIGR protein family HMM TIGR00195. | 0.692 |
| CC_0377 | dinB | CC_0377 | CC_2466 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | DNA-damage-inducible protein P; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.452 |
| CC_0377 | dnaN | CC_0377 | CC_0156 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.541 |
| CC_0377 | mutL | CC_0377 | CC_0695 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex (By similarity). | 0.437 |
| CC_0377 | sfsA | CC_0377 | CC_2675 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Sugar fermentation stimulation protein; Identified by match to TIGR protein family HMM TIGR00230; Belongs to the SfsA family. | 0.935 |
| CC_0382 | CC_0377 | CC_0382 | CC_0377 | DNA-3-methyladenine glycosylase I; Identified by match to protein family HMM. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.427 |
| CC_2011 | CC_0377 | CC_2011 | CC_0377 | Exodeoxyribonuclease III; Identified by match to TIGR protein family HMM TIGR00195. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.692 |
| CC_2011 | CC_3706 | CC_2011 | CC_3706 | Exodeoxyribonuclease III; Identified by match to TIGR protein family HMM TIGR00195. | Exodeoxyribonuclease III; Identified by match to TIGR protein family HMM TIGR00195. | 0.919 |
| CC_2011 | dnaN | CC_2011 | CC_0156 | Exodeoxyribonuclease III; Identified by match to TIGR protein family HMM TIGR00195. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.769 |
| CC_3538 | CC_0377 | CC_3538 | CC_0377 | Helicase, UvrD/Rep family; Identified by match to protein family HMM; Belongs to the helicase family. UvrD subfamily. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.434 |
| CC_3538 | mutL | CC_3538 | CC_0695 | Helicase, UvrD/Rep family; Identified by match to protein family HMM; Belongs to the helicase family. UvrD subfamily. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex (By similarity). | 0.449 |
| CC_3706 | CC_0377 | CC_3706 | CC_0377 | Exodeoxyribonuclease III; Identified by match to TIGR protein family HMM TIGR00195. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.692 |
| CC_3706 | CC_2011 | CC_3706 | CC_2011 | Exodeoxyribonuclease III; Identified by match to TIGR protein family HMM TIGR00195. | Exodeoxyribonuclease III; Identified by match to TIGR protein family HMM TIGR00195. | 0.919 |
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