STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0391feruloyl-CoA synthetase; Identified by match to protein family HMM. (596 aa)    
Predicted Functional Partners:
CC_2404
P-hydroxybenzoate hydroxylase; Identified by match to PFAM protein family HMM PF01360.
  
  
 0.646
CC_2393
Vanillate O-demethylase oxygenase, subunit A; Identified by match to protein family HMM.
  
  
 0.584
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.548
CC_0390
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.545
CC_0389
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.540
CC_2391
Transcriptional regulator, MarR family; Identified by match to protein family HMM.
  
     0.529
CC_3189
Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.
  
 
 0.521
CC_1813
Identified by match to PFAM protein family HMM PF00378.
  
 
 0.520
CC_0076
Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.
  
 
 0.517
CC_2921
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.495
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.