Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
CC_0063 | CC_0395 | Identified by match to protein family HMM; Belongs to the cytochrome P450 family. | Identified by match to protein family HMM. | 0.411 |
CC_0394 | CC_0395 | Hypothetical protein; Identified by Glimmer2; putative. | Identified by match to protein family HMM. | 0.458 |
CC_0395 | CC_0063 | Identified by match to protein family HMM. | Identified by match to protein family HMM; Belongs to the cytochrome P450 family. | 0.411 |
CC_0395 | CC_0394 | Identified by match to protein family HMM. | Hypothetical protein; Identified by Glimmer2; putative. | 0.458 |
CC_0395 | CC_0396 | Identified by match to protein family HMM. | Transcriptional regulator, MarR family; Identified by match to protein family HMM. | 0.644 |
CC_0395 | CC_0397 | Identified by match to protein family HMM. | Identified by match to PFAM protein family HMM PF00378. | 0.641 |
CC_0395 | CC_1201 | Identified by match to protein family HMM. | Class II aldolase/adducin domain protein; Identified by match to protein family HMM. | 0.404 |
CC_0395 | CC_3309 | Identified by match to protein family HMM. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.485 |
CC_0396 | CC_0395 | Transcriptional regulator, MarR family; Identified by match to protein family HMM. | Identified by match to protein family HMM. | 0.644 |
CC_0396 | CC_0397 | Transcriptional regulator, MarR family; Identified by match to protein family HMM. | Identified by match to PFAM protein family HMM PF00378. | 0.778 |
CC_0397 | CC_0395 | Identified by match to PFAM protein family HMM PF00378. | Identified by match to protein family HMM. | 0.641 |
CC_0397 | CC_0396 | Identified by match to PFAM protein family HMM PF00378. | Transcriptional regulator, MarR family; Identified by match to protein family HMM. | 0.778 |
CC_1201 | CC_0395 | Class II aldolase/adducin domain protein; Identified by match to protein family HMM. | Identified by match to protein family HMM. | 0.404 |
CC_3309 | CC_0395 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Identified by match to protein family HMM. | 0.485 |