CC_0440 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_0440

Chemotaxis protein CheYIII; Identified by match to protein family HMM. (200 aa)

Predicted Functional Partners:

CC_0437

0.959

cheB1

0.880

cheW

0.862

CC_0433

0.858

cheD

0.823

CC_0435

0.810

CC_0439

0.789

CC_0441

0.787

CC_2670

0.691

CC_0432

0.675

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC_0432	CC_0433	CC_0432	CC_0433	Chemotaxis protein CheYI; Identified by match to protein family HMM.	Chemotaxis protein CheA; Identified by match to protein family HMM.	0.996
CC_0432	CC_0435	CC_0432	CC_0435	Chemotaxis protein CheYI; Identified by match to protein family HMM.	Chemotaxis protein methyltransferase CheR; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.	0.857
CC_0432	CC_0437	CC_0432	CC_0437	Chemotaxis protein CheYI; Identified by match to protein family HMM.	Chemotaxis protein CheYII; Identified by match to protein family HMM.	0.750
CC_0432	CC_0439	CC_0432	CC_0439	Chemotaxis protein CheYI; Identified by match to protein family HMM.	cheU protein; Similar to GB:X80205 PID:534997; identified by sequence similarity; putative.	0.575
CC_0432	CC_0440	CC_0432	CC_0440	Chemotaxis protein CheYI; Identified by match to protein family HMM.	Chemotaxis protein CheYIII; Identified by match to protein family HMM.	0.675
CC_0432	CC_0441	CC_0432	CC_0441	Chemotaxis protein CheYI; Identified by match to protein family HMM.	CheE protein; Identified by match to protein family HMM.	0.585
CC_0432	CC_2670	CC_0432	CC_2670	Chemotaxis protein CheYI; Identified by match to protein family HMM.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	0.533
CC_0432	cheB1	CC_0432	CC_0436	Chemotaxis protein CheYI; Identified by match to protein family HMM.	Protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.	0.904
CC_0432	cheD	CC_0432	CC_0438	Chemotaxis protein CheYI; Identified by match to protein family HMM.	Chemotaxis protein CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.	0.914
CC_0432	cheW	CC_0432	CC_0434	Chemotaxis protein CheYI; Identified by match to protein family HMM.	Chemotaxis protein CheW; Involved in the transmission of sensory signals from the chemoreceptors to the flagellar motors.	0.969
CC_0433	CC_0432	CC_0433	CC_0432	Chemotaxis protein CheA; Identified by match to protein family HMM.	Chemotaxis protein CheYI; Identified by match to protein family HMM.	0.996
CC_0433	CC_0435	CC_0433	CC_0435	Chemotaxis protein CheA; Identified by match to protein family HMM.	Chemotaxis protein methyltransferase CheR; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.	0.973
CC_0433	CC_0437	CC_0433	CC_0437	Chemotaxis protein CheA; Identified by match to protein family HMM.	Chemotaxis protein CheYII; Identified by match to protein family HMM.	0.997
CC_0433	CC_0439	CC_0433	CC_0439	Chemotaxis protein CheA; Identified by match to protein family HMM.	cheU protein; Similar to GB:X80205 PID:534997; identified by sequence similarity; putative.	0.776
CC_0433	CC_0440	CC_0433	CC_0440	Chemotaxis protein CheA; Identified by match to protein family HMM.	Chemotaxis protein CheYIII; Identified by match to protein family HMM.	0.858
CC_0433	CC_0441	CC_0433	CC_0441	Chemotaxis protein CheA; Identified by match to protein family HMM.	CheE protein; Identified by match to protein family HMM.	0.780
CC_0433	CC_2670	CC_0433	CC_2670	Chemotaxis protein CheA; Identified by match to protein family HMM.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	0.666
CC_0433	cheB1	CC_0433	CC_0436	Chemotaxis protein CheA; Identified by match to protein family HMM.	Protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.	0.999
CC_0433	cheD	CC_0433	CC_0438	Chemotaxis protein CheA; Identified by match to protein family HMM.	Chemotaxis protein CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.	0.986
CC_0433	cheW	CC_0433	CC_0434	Chemotaxis protein CheA; Identified by match to protein family HMM.	Chemotaxis protein CheW; Involved in the transmission of sensory signals from the chemoreceptors to the flagellar motors.	0.998