STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0445Transcriptional regulator, GntR family; Identified by match to protein family HMM. (247 aa)    
Predicted Functional Partners:
CC_0443
N-acetylglucosamine-6-phosphate deacetylase; Identified by match to TIGR protein family HMM TIGR00221.
 
  
 0.916
CC_0446
TonB-dependent receptor; Identified by match to protein family HMM.
 
  
 0.870
CC_0444
SIS domain protein; Identified by match to protein family HMM.
 
  
 0.841
CC_3164
Transcriptional regulator, Cro/CI family; Identified by match to protein family HMM.
   
  
 0.749
CC_0449
PTS system, N-acetylglucosamine-specific IIABC component; Identified by match to protein family HMM.
 
  
 0.745
CC_0534
N-acetylglucosamine-6-phosphate deacetylase; Identified by match to TIGR protein family HMM TIGR00221.
 
  
 0.742
astB1
Succinylarginine dihydrolase; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2).
      
 0.733
CC_3270
Transcriptional regulator, Cro/CI family; Identified by match to protein family HMM.
      
 0.731
CC_0731
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.730
CC_3654
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.730
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.