STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0483Hypothetical protein; Identified by Glimmer2; putative. (249 aa)    
Predicted Functional Partners:
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.775
CC_1509
2-keto-4-pentenoate hydratase, putative; Identified by match to protein family HMM.
  
     0.548
rplY
Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
       0.545
CC_2565
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.517
CC_2894
Identified by match to PFAM protein family HMM PF02105.
  
     0.512
CC_0649
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.490
CC_2898
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.486
CC_2961
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.481
CC_1641
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.480
CC_0087
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.437
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.