STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0533Conserved hypothetical protein; Identified by Glimmer2; putative. (770 aa)    
Predicted Functional Partners:
CC_0534
N-acetylglucosamine-6-phosphate deacetylase; Identified by match to TIGR protein family HMM TIGR00221.
       0.773
CC_0535
SIS domain protein; Identified by match to protein family HMM.
       0.773
CC_0447
beta-N-acetylhexosaminidase, putative; Identified by match to PFAM protein family HMM PF00728.
  
 0.742
nuoB
NADH dehydrogenase I, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
 
      0.657
CC_0536
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
       0.655
CC_0795
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.653
CC_0862
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.602
CC_1103
Sugar transporter, fucose permease family; Identified by match to protein family HMM.
 
     0.588
CC_0796
Alpha-glucosidase, putative; Similar to PID:1519526; identified by sequence similarity; putative.
  
     0.577
CC_2152
Secreted protein, putative; Identified by match to protein family HMM.
  
     0.529
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.