STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0540alpha-N-acetylglucosaminidase; Similar to GB:U43572 GB:L78464 SP:P54802 PID:1171229 PID:1171231; identified by sequence similarity; putative. (770 aa)    
Predicted Functional Partners:
CC_0541
Hypothetical protein; Identified by Glimmer2; putative.
 
 
  0.941
CC_0542
Periplasmic phosphoanhydride phosphohydrolase; Identified by match to protein family HMM.
       0.768
CC_0543
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.683
CC_0539
TonB-dependent receptor; Identified by Glimmer2; putative.
 
    0.648
CC_0447
beta-N-acetylhexosaminidase, putative; Identified by match to PFAM protein family HMM PF00728.
 
 
 
 0.630
CC_0795
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.599
CC_2449
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.575
CC_1277
Identified by match to PFAM protein family HMM PF01663.
  
  0.562
rpsP
Ribosomal protein S16; Identified by match to TIGR protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family.
  
 
   0.542
rplX
Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
  
     0.479
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.