STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0542Periplasmic phosphoanhydride phosphohydrolase; Identified by match to protein family HMM. (414 aa)    
Predicted Functional Partners:
CC_0358
Acid phosphatase; Identified by match to PFAM protein family HMM PF01178.
 
  
  0.921
CC_0703
Riboflavin biosynthesis protein RibF; Identified by match to TIGR protein family HMM TIGR00083; Belongs to the ribF family.
     
  0.900
CC_0886
Riboflavin synthase, alpha subunit; Identified by match to TIGR protein family HMM TIGR00187.
     
  0.900
CC_1295
3-phytase, fusion, putative; Identified by match to protein family HMM.
   
 
  0.900
CC_0540
alpha-N-acetylglucosaminidase; Similar to GB:U43572 GB:L78464 SP:P54802 PID:1171229 PID:1171231; identified by sequence similarity; putative.
       0.768
CC_0541
Hypothetical protein; Identified by Glimmer2; putative.
       0.768
CC_0543
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.637
CC_0539
TonB-dependent receptor; Identified by Glimmer2; putative.
       0.481
CC_0562
TonB-dependent receptor; Identified by match to protein family HMM.
 
     0.439
CC_1924
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.422
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.