CC_0562 protein (Caulobacter vibrioides CB15)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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Gene Fusion

Cooccurrence

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Experiments

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[Homology]

Score

CC_0562

TonB-dependent receptor; Identified by match to protein family HMM. (1046 aa)

Predicted Functional Partners:

CC_1754

0.780

CC_0970

0.773

CC_2832

0.769

CC_0442

0.731

CC_0571

0.730

CC_0446

0.698

CC_0539

0.648

CC_1781

0.631

CC_0858

0.611

CC_2925

0.611

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CC_0442	CC_0562	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.731
CC_0446	CC_0562	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.698
CC_0539	CC_0562	TonB-dependent receptor; Identified by Glimmer2; putative.	TonB-dependent receptor; Identified by match to protein family HMM.	0.648
CC_0562	CC_0442	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.731
CC_0562	CC_0446	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.698
CC_0562	CC_0539	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by Glimmer2; putative.	0.648
CC_0562	CC_0571	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.730
CC_0562	CC_0858	TonB-dependent receptor; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.611
CC_0562	CC_0970	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Similar to GP:9187833; identified by sequence similarity; putative.	0.773
CC_0562	CC_1754	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.780
CC_0562	CC_1781	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.631
CC_0562	CC_2832	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.769
CC_0562	CC_2925	TonB-dependent receptor; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.611
CC_0571	CC_0562	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.730
CC_0858	CC_0562	Hypothetical protein; Identified by Glimmer2; putative.	TonB-dependent receptor; Identified by match to protein family HMM.	0.611
CC_0858	CC_0970	Hypothetical protein; Identified by Glimmer2; putative.	TonB-dependent receptor; Similar to GP:9187833; identified by sequence similarity; putative.	0.662
CC_0858	CC_1754	Hypothetical protein; Identified by Glimmer2; putative.	TonB-dependent receptor; Identified by match to protein family HMM.	0.604
CC_0858	CC_2832	Hypothetical protein; Identified by Glimmer2; putative.	TonB-dependent receptor; Identified by match to protein family HMM.	0.547
CC_0970	CC_0562	TonB-dependent receptor; Similar to GP:9187833; identified by sequence similarity; putative.	TonB-dependent receptor; Identified by match to protein family HMM.	0.773
CC_0970	CC_0858	TonB-dependent receptor; Similar to GP:9187833; identified by sequence similarity; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.662