CC_0571 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_0571

TonB-dependent receptor; Identified by match to protein family HMM. (997 aa)

Predicted Functional Partners:

CC_1295

0.731

CC_0562

0.730

CC_1000

0.723

CC_1001

0.718

CC_2806

0.701

CC_1002

0.685

CC_1970

0.677

CC_0971

0.663

CC_2288

0.654

CC_1755

0.650

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CC_0562	CC_0571	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.730
CC_0562	CC_1295	TonB-dependent receptor; Identified by match to protein family HMM.	3-phytase, fusion, putative; Identified by match to protein family HMM.	0.562
CC_0562	CC_1970	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Similar to GP:9946027; identified by sequence similarity; putative.	0.565
CC_0571	CC_0562	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.730
CC_0571	CC_0971	TonB-dependent receptor; Identified by match to protein family HMM.	Tryptophan halogenase, putative; Identified by match to protein family HMM.	0.663
CC_0571	CC_1000	TonB-dependent receptor; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.723
CC_0571	CC_1001	TonB-dependent receptor; Identified by match to protein family HMM.	Pass1-related protein; Similar to GP:5731277; identified by sequence similarity; putative.	0.718
CC_0571	CC_1002	TonB-dependent receptor; Identified by match to protein family HMM.	Tryptophan halogenase, putative; Similar to GP:5669511; identified by sequence similarity; putative.	0.685
CC_0571	CC_1295	TonB-dependent receptor; Identified by match to protein family HMM.	3-phytase, fusion, putative; Identified by match to protein family HMM.	0.731
CC_0571	CC_1755	TonB-dependent receptor; Identified by match to protein family HMM.	Tryptophan halogenase, putative; Identified by match to protein family HMM.	0.650
CC_0571	CC_1970	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Similar to GP:9946027; identified by sequence similarity; putative.	0.677
CC_0571	CC_2288	TonB-dependent receptor; Identified by match to protein family HMM.	Tryptophan halogenase, putative; Similar to GP:5669518; identified by sequence similarity; putative.	0.654
CC_0571	CC_2806	TonB-dependent receptor; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.701
CC_0971	CC_0571	Tryptophan halogenase, putative; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.663
CC_0971	CC_1000	Tryptophan halogenase, putative; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.756
CC_0971	CC_1001	Tryptophan halogenase, putative; Identified by match to protein family HMM.	Pass1-related protein; Similar to GP:5731277; identified by sequence similarity; putative.	0.769
CC_1000	CC_0571	Hypothetical protein; Identified by Glimmer2; putative.	TonB-dependent receptor; Identified by match to protein family HMM.	0.723
CC_1000	CC_0971	Hypothetical protein; Identified by Glimmer2; putative.	Tryptophan halogenase, putative; Identified by match to protein family HMM.	0.756
CC_1000	CC_1001	Hypothetical protein; Identified by Glimmer2; putative.	Pass1-related protein; Similar to GP:5731277; identified by sequence similarity; putative.	0.950
CC_1000	CC_1002	Hypothetical protein; Identified by Glimmer2; putative.	Tryptophan halogenase, putative; Similar to GP:5669511; identified by sequence similarity; putative.	0.928