STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0574Conserved hypothetical protein; Identified by Glimmer2; putative. (867 aa)    
Predicted Functional Partners:
CC_0573
Transcriptional regulator, LacI family; Identified by match to protein family HMM.
 
     0.782
CC_0447
beta-N-acetylhexosaminidase, putative; Identified by match to PFAM protein family HMM PF00728.
   
 0.711
CC_0795
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.626
CC_0572
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.619
CC_1103
Sugar transporter, fucose permease family; Identified by match to protein family HMM.
 
     0.592
CC_0862
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.582
CC_0796
Alpha-glucosidase, putative; Similar to PID:1519526; identified by sequence similarity; putative.
  
     0.576
CC_2152
Secreted protein, putative; Identified by match to protein family HMM.
  
     0.500
CC_1757
Glycosyl hydrolase, family 30; Identified by match to protein family HMM; Belongs to the glycosyl hydrolase 30 family.
  
    0.482
CC_3031
Phospholipase C; Similar to GB:M30223 SP:P15713 GB:M59304 PID:151496 PID:151498; identified by sequence similarity; putative.
  
    0.476
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.