STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0588Chemotaxis protein CheYI; Identified by match to protein family HMM. (125 aa)    
Predicted Functional Partners:
CC_0652
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.
 
 
 0.942
CC_2670
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.
 
 
 0.936
CC_0433
Chemotaxis protein CheA; Identified by match to protein family HMM.
  
 0.927
CC_0594
Chemotaxis protein CheA; Identified by match to protein family HMM.
  
 0.924
fliN
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation (By similarity). Belongs to the FliN/MopA/SpaO family.
   
 0.917
CC_0431
CheX protein; Similar to GP:3282790; identified by sequence similarity; putative.
  
 
 0.913
CC_2175
FliN family protein; Identified by match to PFAM protein family HMM PF01052.
   
 0.912
CC_0026
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.
 
 
 0.889
CC_3191
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.
 
 
 0.884
CC_2971
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.
 
 
0.883
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.