STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0611Nitrate ABC transporter, ATP-binding protein; Identified by match to protein family HMM. (261 aa)    
Predicted Functional Partners:
CC_0609
Nitrate ABC transporter, periplasmic nitrate-binding protein; Similar to PID:1652571; identified by sequence similarity; putative.
 
 0.999
CC_0610
Nitrate ABC transporter, permease protein; Identified by match to protein family HMM.
 
 0.997
CC_0617
NasA/NapA/NarB nitrate reductase, large subunit family protein; Identified by match to PFAM protein family HMM PF00384; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.977
CC_0329
Molybdenum ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
  
 0.901
CC_3280
ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
 
   
0.898
CC_3299
ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
 
    
0.898
CC_0612
Response regulator NasT; Identified by match to protein family HMM.
 
   
 0.883
CC_3566
ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
 
     
0.865
CC_0838
ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
 
    
0.821
CC_2635
ABC transporter, permease protein, putative; Identified by match to protein family HMM.
  
 0.799
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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